Plantae | Exosome-Deficient Mutants Reveal Rare Promoter Upstream Transcripts (PROMPTs) in Arabidopsis | Plantae
Alternative transcription start sites contribute to acute-stress-induced transcriptome response in human skeletal muscle | Human Genomics | Full Text
CAGEr: an R package for CAGE (Cap Analysis of Gene Expression) data analysis and promoterome mining
CAGE - A highly sensitive and precise means of gene expression analysis.
Promoter-Intrinsic and Local Chromatin Features Determine Gene Repression in LADs - ScienceDirect
Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers | Genome Biology | Full Text
Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns | The EMBO Journal
Enhancer–promoter entanglement explains their transcriptional interdependence | PNAS
Nucleosome signal in promoters
Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension | Life Science Alliance
Differential TSS usage. (a) Schematics of differential TSS usage... | Download Scientific Diagram
Solving the transcription start site identification problem with ADAPT-CAGE: a Machine Learning algorithm for the analysis of CAGE data | Scientific Reports
FANTOM - Basic CAGE Technology
Cap analysis of gene expression reveals alternative promoter usage in a rat model of hypertension | Life Science Alliance
Delineation of the DNA Structural Features of Eukaryotic Core Promoter Classes | ACS Omega
CAGE-1 CRISPR Knockout and Activation Products (m) | SCBT - Santa Cruz Biotechnology
The effect of genetic variation on promoter usage and enhancer activity | Nature Communications
Frontiers | Characterizing Promoter and Enhancer Sequences by a Deep Learning Method
Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters
Systematic analysis of transcription start sites in avian development | PLOS Biology
Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns | The EMBO Journal
Epigenomes | Free Full-Text | Promoter-Adjacent DNA Hypermethylation Can Downmodulate Gene Expression: TBX15 in the Muscle Lineage
